Arabidopsis tf database
Web1 gen 2008 · Several Arabidopsis TF online databases such as AtTFDB and RARTF are available over the Internet ( 3, 4). In previous work, we have systematically predicted and … WebOverall, we found that TF ChIP–seq data confirmed 39% of predicted interactions in the iGRN, demonstrating that a large fraction of iGRN interactions are supported by in vivo …
Arabidopsis tf database
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Web1 gen 2010 · AtTFDB is the first Arabidopsis TF databases hosted by the Arabidopsis gene regulatory information server (AGRIS) at the Ohio State University [see Chapter 2 and ref. ()].It classified TFs into different families based on the type of the corresponding DBDs. Recently, AtTFDB further integrated information about the potential regulatory … WebUsing the example of the TF proteins, database searching based upon conserved secondary structure was used to identify potential homologs in different species. In this study we applied a similar in silico strategy in order to identify a candidate for the Arabidopsis TF protein. This led to the identification of two ...
Web30 dic 2015 · Main conclusion Diverse bioinformatic resources have been developed for plant transcription factor (TF) research. This review presents the bioinformatic resources and methodologies for the elucidation of … Web7 dic 2015 · Several ArabidopsisTF online databases such as AtTFDB and RARTFare available over the Internet (3,4). In previous work,we have systematically predicted and annotated thetranscription factors in Arabidopsis, rice and poplarbased on their genome sequences, and constructed threedistinct TF databases (5–7).
WebJASPAR is an open-access database of curated, non-redundant transcription factor (TF) binding profiles stored as position frequency matrices (PFMs) and TF flexible models … Websis of Arabidopsis.TheArabidopsis TF database (RARTF) hosted by the RIKEN BioResource Center in Japan applies PSI-BLAST and InterProScan to the identification of all putative TFs in Ara-bidopsis (7).
WebWe started to construct the database of Arabidopsis TFs in 2005 and developed a pipeline for systematic identification of plant TFs from genomic and transcript ... domain …
WebAbout TAIR The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana.Data available from TAIR includes the complete genome sequence along with gene structure, gene product information, gene expression, DNA and seed stocks, genome maps, … persian to spanishWebAAtDB, An Arabidopsis thaliana Database. The latest version of AAtDB is available for UNIX and Macintosh operating systems. To get your own copy of the software, connect … persian tomato and cucumber saladWebPlantTribes -- a gene and gene family resource for comparative genomics in plants. A plant gene family database based on the inferred proteomes of five sequenced plant species: … persian torshiWebAbout Arabidopsis thaliana. Arabidopsis thaliana is a small flowering plant that is widely used as a model organism in plant biology. Arabidopsis is a member of the mustard (Brassicaceae) family, which includes cultivated species such as cabbage and radish. Arabidopsis is not of major agronomic significance, but its small genome size and ease ... persian toys for childrenWeb10 feb 2024 · Salt stress inhibits normal plant growth and development by disrupting cellular water absorption and metabolism. Therefore, understanding plant salt tolerance mechanisms should provide a theoretical basis for developing salt-resistant varieties. Here, we cloned ThTrx5 from Tamarix hispida, a salt-resistant woody shrub, and generated … stamford ct iqsWebNational Center for Biotechnology Information persian toursWeb21 mar 2006 · DRTF is the first database of TFs for indica and the most annotated one for japonica. Currently, there is little annotation available for the indica genome in the public … stamford ct kpmg office